2019 Publications

Selected publications of CREID investigators

Baines SL, Jensen SO, Firth N, da Silva AG, Seemann T, Carter GP,  Williamson DA, Howden BP, Stinear TP. 2019. Remodeling of pSK1 family plasmids and enhanced chlorhexidine tolerance in a dominant hospital lineage of methicillin-resistant staphylococcus aureus. Antimicrobial Agents and Chemotherapy doi:10.1128/AAC.02356-18

Bainomugisa A, Pandey S, Donnan E, Simpson G, … Moke R, Vincent S, Sintchenko V, Marais BJ, Coin LJM, Coulter C.2019. Cross-border movement of highly drug-resistant Mycobacterium tuberculosis from papua new guinea to Australia through Torres Strait protected zone, 2010-2015. Emerging Infectious Diseases 25:406-415

Blyth CC, Macartney KK, McRae J, .., Kelly PM, Cheng AC, Holmes M, Dwyer DE, …,Britton P, et al. 2019. Influenza Epidemiology, Vaccine Coverage and Vaccine Effectiveness in Children Admitted to Sentinel Australian Hospitals in 2017: Results from the PAEDS-FluCAN Collaboration. Clinical Infectious Diseases 68:940-948

Bunker D, Ehnis C, Shahbazi M. 2019. Managing influenza outbreaks through social interaction on social media: Research transformation through an engaged scholarship approach, Studies in Health Technology and Informatics vol 259, p 39-44

Chamings A, Druce J, Caly L, Yoga Y, Britton PN, Macartney KK, Alexandersen S.2019. Evolutionary analysis of human parechovirus type 3 and clinical outcomes of infection during the 2017–18 Australian epidemic. Scientific Reports 9, doi: 10.1038/s41598-019-45445-z

Cliff OM, Sintchenko V, Sorrell TC, Vadlamudi K, McLean N, Prokopenko M. 2019. Network properties of salmonella epidemics. Scientific Reports 9(1): 6159

Degeling C, Johnson J, Gilbert GL. 2019. Perspectives of Australian policy-makers on the potential benefits and risks of technologically enhanced communicable disease surveillance - A modified Delphi survey. Health Research Policy and Systems 17, doi: 10.1186/s12961-019-0440-3

Dotel R, O'Sullivan MVN, Davis JS, Newton PJ, Gilbert GL. 2019. Molecular epidemiology of methicillin-resistant Staphylococcus aureus isolates in New South Wales, Australia, 2012–2017. Infection, Disease and Health doi:10.1016/j.idh.2019.04.002

Douglas AP, Marshall C, Baines SL, Ritchie D, Szer J, Madigan V, Chan HT, Ballard SA, Howden BP, Buising K, Slavin MA. 2019. Utilizing genomic analyses to investigate the first outbreak of vanA vancomycin-resistant enterococcus in Australia with emergence of daptomycin non-susceptibility. Journal of Medical Microbiology 68:303-308

Ehnis C, Bunker D.2019. Repertoires of collaboration: incorporation of social media help requests into the common operating picture. Behaviour and Information Technology doi:10.1080/0144929X.2019.1621934

Fajardo-Lubián A, Ben Zakour NL, Agyekum A, Qi Q, Iredell JR. 2019. Host adaptation and convergent evolution increases antibiotic resistance without loss of virulence in a major human pathogen. PLoS Pathogens 15, doi: 10.1371/journal.ppat.1007218

Harapan H, Michie A, Mudatsir M, Sasmono RT, Imrie A. 2019. Epidemiology of dengue hemorrhagic fever in Indonesia: Analysis of five decades data from the National Disease Surveillance. BMC Research Notes 12, doi:10.1186/s13104-019-4379-9

Harapan H, Michie A, Yohan B, Shu PY, Mudatsir M, Sasmono RT, Imrie A. 2019. Dengue viruses circulating in Indonesia: A systematic review and phylogenetic analysis of data from five decades. Reviews in Medical Virology doi:10.1002/rmv.2037

Hill-Cawthorne G, Negin J, Capon T, Gilbert GL, Nind L, Nunn M, Ridgway P, Schipp M, Firman J, Sorrell TC, Marais BJ. 2019. Advancing Planetary Health in Australia: Focus on emerging infections and antimicrobial resistance. BMJ Global Health 4 (2), doi:10.1136/bmjgh-2018-001283

Gilbert GL, Kerridge I. 2019. The politics and ethics of hospital infection prevention and control: A qualitative case study of senior clinicians' perceptions of professional and cultural factors that influence doctors' attitudes and practices in a large Australian hospital. BMC Health Services Research 19, doi: 10.1186/s12913-019-4044-y

Harvey E, Rose K, Eden JS, Lo N, Abeyasuriya T, Shi M, Doggett SL, Holmes EC. 2019. Extensive Diversity of RNA Viruses in Australian Ticks. Journal of virology 93, doi: 10.1128/JVI.01358-18

Jiang JH, Dexter C, Cameron DR, Monk IR, Baines SL, Abbott IJ, … Nethercott C, Howden BP, Peleg AY. 2019. Evolution of daptomycin resistance in coagulase-negative staphylococci involves mutations of the essential two-component regulator WALKR. Antimicrobial Agents and Chemotherapy doi:10.1128/AAC.01926-18

Johnson J, Howard K, Wilson A, Ward M, Gilbert GL, Degeling C. 2019. Public preferences for One Health approaches to emerging infectious diseases: A discrete choice experiment. Social Science and Medicine 228:164-171

Ma GC, Worthing KA, Ward MP, Norris JM. 2019. Commensal Staphylococci Including Methicillin-Resistant Staphylococcus aureus from Dogs and Cats in Remote New South Wales, Australia. Microbial Ecology doi:10.1007/s00248-019-01382-y

Marais BJ, Williams S, Li A, Ofrin R, Merianos A, Negin J, Firman J, Davies R, Sorrell T. 2019. Improving emergency preparedness and response in the Asia-Pacific. BMJ Global Health 4 (1), doi: 10.1136/bmjgh-2018-001271

Marcelino VR, Wille M, Hurt AC, González-Acuña D, Klaassen M, Schlub TE, Eden JS, Shi M, Iredell JR, Sorrell TC, Holmes EC. 2019. Meta-transcriptomics reveals a diverse antibiotic resistance gene pool in avian microbiomes. BMC Biology 17(1), doi: 10.1186/s12915-019-0649-1

Meyer W, Irinyi L, Hoang MTV, .., Woo PCY, Pchelin IM, Uhrlaß S, Nenoff P, Chindamporn A, Chen S, Hebert PDN, Sorrell TC. 2019. Database establishment for the secondary fungal DNA barcode translational elongation factor 1α (TEF1α). Genome62:160-169

Mu A, Kwong JC, Isles NS, da Silva AG, Schultz MB, Ballard SA, Lane CR, Carter GP, Williamson DA, Seemann T, Stinear TP, Howden BP. 2019. Reconstruction of the genomes of drug-resistant pathogens for outbreak investigation through metagenomic sequencing. mSphere 4,doi: 10.1128/mSphere.00529-18

Palagyi A, Marais BJ, Abimbola S, Topp SM, McBryde ES, Negin J.2019. Health system preparedness for emerging infectious diseases: A synthesis of the literature. Global Public Health doi:10.1080/17441692.2019.1614645

Rowe SL, Perrett KP, Morey R, Stephens N, Cowie BC, Nolan TM, Leder K, Pitcher H, Sutton B, Cheng AC. 2019. Influenza and pertussis vaccination of women during pregnancy in Victoria, 2015–2017. Medical Journal of Australia 210:454-462

Rukambile E, Sintchenko V, Muscatello G, Kock R, Alders R. 2019. Infection, colonization and shedding of Campylobacter and Salmonella in animals and their contribution to human disease: A review. Zoonoses and Public Health doi:10.1111/zph.12611

Shah Z, Martin P, Coiera E, Mandl KD, Dunn AG. 2019. Modeling spatiotemporal factors associated with sentiment on twitter: Synthesis and suggestions for improving the identification of localized deviations. Journal of Medical Internet Research 21, doi: 10.2196/12881

Williamson DA, Howden BP, Paterson DL. 2019. The risk of resistance: what are the major antimicrobial resistance threats facing Australia? Medical Journal of Australia doi:10.5694/mja2.50249

Williamson DA, Kirk MD, Sintchenko V, Howden BP. 2019. The importance of public health genomics for ensuring health security for Australia. Medical Journal of Australia 210:295-297.e291

Wyres KL, Hawkey J, Hetland MAK, Fostervold A, Wick RR, Judd LM, Hamidian M, Howden BP, Löhr IH, Holt KE. 2019. Emergence and rapid global dissemination of CTX-M-15-associated Klebsiella pneumoniae strain ST307. Journal of Antimicrobial Chemotherapy 74:577-581